Setting up ABLE normally (i.e. outside of workshop)

The original install instructions can be found directly from the ABLE Github repository.

Setting up ABLE for CompPhylo

• Open a terminal from your Jupyter dashboard and make sure you are in your HOME folder. You should be in either /usit/abel/u1/<username> or /cluster/home/<username>

  cd
  pwd
  

• ONLY for the TEST users. You will have to do an additional cd <username> which should get you to either /usit/abel/u1/isaactest/<username> or /cluster/home/isaactest/<username>

  cd
  pwd
  

• Download the compiled ABLE_compphylo setup from the shared folder for project nn9458k

  rsync -a /work/projects/nn9458k/ABLE_compphylo.tar.bz2 .
  tar -xjf ABLE_compphylo.tar.bz2
  

• We shall try to make it easier to run ABLE from any folder on your Jupyter notebook setup (not for the TEST users)

  cd
  mkdir bin
  cd bin
  ln -s ../ABLE_compphylo/ABLE/ABLE ABLE
  

• And finally we will run this command (which adds the bin folder to the PATH variable) whenever necessary (not for the TEST users)

  export PATH="$HOME/bin:$PATH"